SPARQL query (in a file) on graph database
The demos of the FAIRness (e.g. digital resources automatically found and reused by machines) for the WP6 of the EU Horizon 2020 EOSC-Life project.
A demo of the FAIRness of data
A taverna workflow to demonstrate the FAIRness with specific data, i.e. the mappings between the terms of two standard medical ontologies, through FAIR Data Points .
An extension of Data Catalog Vocabulary ( DCAT2 ) with a couple of new dcat:Resource types, including mapping and workflow, is used in the demo. A RDF file with mappings between SNOMED terms to ORDO terms are generated beforehand via SPARQL query on the Mondo Disease Ontology ( Mondo ) using RDFLib . The Simple Standard for Sharing Ontology Mappings ( SSSOM ) is used to form each mapping in a repository of mappings.
A demo of the FAIRness of workflows
A CWL workflow composed of multiple single-function CWL workflows (for getting RO-Crate hosted on WorkflowHub, extracting the target workflow from RO-Crate, then executing it) to demonstrate the FAIRness of specific workflow, i.e. the workflow for finding and reusing the mappings between the SNOMED terms and ORDO terms, through WorkflowHub .
Licenses
Project Scripts under this folder and recursive subfolders are licensed under the terms of the MIT License . Project Data under this folder and recursive subfolders are licensed under the terms of the CC0 License .
Code Snippets
5 6 7 8 9 10 11 12 13 14 15 16 17 | baseCommand: [curl, -d] inputs: query_file: type: File inputBinding: position: 1 prefix: '@' separate: false endpoint: type: string inputBinding: position: 2 |
Support
- Future updates
Related Workflows





