All Published Workflows

2 workflows that have been reviewed and published

v-pipe
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V-pipe is a pipeline designed for analysing NGS data of short viral genomes
public

public

V-pipe is a workflow designed for the analysis of next generation sequencing (NGS) data from viral pathogens. It produces a n...
Sample annotation Primer removal Quality control report bcl2fastq-nextseq consensusfixer demultiplexer indelfixer Augur BWA Consensus iVar lofreq Pandas SAMtools Snakemake Vicuna numpy PyVCF scikit-bio scipy Genomics
Free
68
natrix
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Open-source bioinformatics pipeline for the preprocessing of raw sequencing data.
public

public

Natrix is an open-source bioinformatics pipeline for the preprocessing of raw sequencing data. The need for a scalable, repro...
raw sequence reads Primer removal Quality control report dada2 BLAST cd-hit Cutadapt FastQC MultiQC Pandas PANDAseq seqtk ShortRead Snakemake Swarm VSEARCH AmpliconDuo data.table ggplot2 xtable dinopy numpy PyYAML tables Function analysis
Free
44